CDS

Accession Number TCMCG057C42797
gbkey CDS
Protein Id XP_018449058.1
Location join(926218..926958,927038..927106,927216..928409,928496..928594,928709..928867,929012..929097,929183..929381,929470..929580,929672..929878,929967..930065)
Gene LOC108820587
GeneID 108820587
Organism Raphanus sativus

Protein

Length 987aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018593556.1
Definition PREDICTED: 110 kDa U5 small nuclear ribonucleoprotein component CLO [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category J
Description U5 small nuclear ribonucleoprotein
KEGG_TC -
KEGG_Module M00354        [VIEW IN KEGG]
M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12852        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005618        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005829        [VIEW IN EMBL-EBI]
GO:0005886        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009790        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009793        [VIEW IN EMBL-EBI]
GO:0009908        [VIEW IN EMBL-EBI]
GO:0010154        [VIEW IN EMBL-EBI]
GO:0015030        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016604        [VIEW IN EMBL-EBI]
GO:0016607        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0030312        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043900        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045595        [VIEW IN EMBL-EBI]
GO:0045694        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0048316        [VIEW IN EMBL-EBI]
GO:0048367        [VIEW IN EMBL-EBI]
GO:0048437        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050793        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051239        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071007        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071944        [VIEW IN EMBL-EBI]
GO:0090567        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0099402        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]
GO:2000026        [VIEW IN EMBL-EBI]
GO:2000241        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGATGATAGCTTGTATGATGAGTTTGGTAACTACATTGGACCTGAGATCGAGTCCGACAGAGAGAGTGATGACGAAATAGAAGACGAGGAGTTCCAGGATAAGCAGCCTGAAGAGGATGGATCAGATGGAGAGCGTGGGCCTGGGGGTTCTAACGGATGGATCACCACGATCAATGACGTGGAGATGGATAACCAGATTGTTCTCCCTGAGGATAAGAAGTACTATCCTACCGCGGAGGAAGTCTACGGGGAGGACGTTGAGACGTTAGTCATGGATGAGGATGAGCAGCCTCTCGAGATGCCGATTATCAAACCTGTCAGAGATGTCAGATTCGAGGTTGGGGTGAAGGATTCCACGACTTACGTGTCAACGCAGTTTCTCGTCGGCCTCATGTCTAATCCAGCGCTTATGAGGAATGTTGCTCTTGTGGGTCATATACAGCATGGGAAAACTGTCTTCATGGATATGTTGGTAGAGCAGACGCACCATATGTCTACTTTTAATGCTAAGAACGAGAAGCACATGAAGTATACAGATACAAGAGTTGATGAGCAGGAGAGGAACATTTCGATCAAGGCGGTTCCGATGTCGCTTGTCCTTGAGGACAGCAGGTCTAAATCATATCTGTGCAATGTCATAGATACTCCGGGTCATGTGAATTTCTCTGATGAAATGACTGCTTCTCTAAGACTCTCTGATGGTGCTGTTCTAATTGTTGACGCTGCTGAAGGAGTGATGGTGAACACTGAGAGGGCTATAAGACATGCAATCCAGGACCATCTTCCTATTGTTGTTGTGATCAACAAGGTTGACAGGCTTATTACCGAGCTCAAACTACCTCCAAGGGATGCTTATTACAAGCTGAGGCATACAATTGAAGTCATTAATAACCACATATCTGCTGCTTCGACGACTGCTGGAAACTTGCCCCTTATAGACCCTGCAGCTGGAAACGTGTGCTTTGCCAGTGGTACTGCCGGATGGTCCTTCACTCTGCAGTCTTTTGCTAAACTGTATTCGAAGCTTCATGGGGTGGACATGGACGTGGATAAGTTTGCATCTAAGCTTTGGGGAGATGTGTATTATCACCCTGATACTCGGGCGTTCAAGAGAAGTCCTCCAGTAGGTGGTGGGGAAAGAGCATTTGTTCAGTTTATTCTAGAGCCTCTATACAAGATATACAGTCAAGTGATAGGTGAGCATAAGAAGAGTGTAGAGACCACCCTTGCAGAACTGGGAGTGACCCTGAGTAATAGTGCATATAAGCTGAACGTCAGACCTCTACTTAGGTTAGCCTGTAGCTCAGTCTTTGGTTCGTCATCAGGCTTCACTGATATGTTGGTAAAGCACATTCCTTCTCCCAAAGAGGCTGCAGCTAGGAAAGTGGACCACGCATACACTGGACCCAAAGATTCTGCCATTTATGAAGCAATGGTAGAATGTGATCCGTCTGGACCTCTCATGGTTAATGTGACAAAGCTATACCCCAAATCAGATACTAGTGTGTTTGATGTATTCGGAAGAGTTTACAGCGGTACACTTCAAACAGGGCAAAGCGTACGTGTACTTGGAGAAGGGTATTCACCTGAAGATGAAGAGGACATGACTATCAAAGAGGTGACCAAGCTGTGGATATACCAAGCGAGGTATAGGATTCCTGTAAGCAGTGCCCCTCCCGGTTCATGGGTTCTGATTGAAGGCGTGGATGCGTCTATCATGAAGACGGCGACGCTCTGCAATGAGAACTACGATGAAGACGTCTTCATATTCCGGGCTCTCCAGTTTAATACTCTTCCAGTTGTCAAGACTGCTACTGAGCCTTTGAATCCTAGTGAGCTACCTAAAATGGTGGAAGGGCTTAGGAAGATTAGCAAAAGCTATCCCCTTGCGATTACCAAAGTTGAGGAGTCTGGTGAACATACTATTCTAGGCACAGGGGAGCTGTACCTGGATTCTATCATGAAGGACCTCAGGGAGCTCTATTCAGAGGTCGAAGTAAAGGTCGCAGATCCGGTTGTTTCCTTTTGTGAGACAGTGGTTGAATCTTCGTCGATGAAGTGTTTTGCTGAGACACCGAACAAAAAGAACAAAATAACTATGATCGCAGAGCCATTGGATAGAGGACTTGCAGAGGACATTGAGAATGGTGTCGTAAGCATTGACTGGAACAGAAAACAACTCGGGGACTTCTTCAAGACGAAATATGACTGGGATTTACTTGCAGCACGTTCCATTTGGGCGTTTGGCCCTGACAAACAGGGTCCGAATATTTTACTGGATGACACGCTCCCAACTGAGGTTGACAAGAACTTGATGATGGCAGTGAAAGACTCCATTGTTCAAGGGTTCCAGTGGGGGGCGCGAGAAGGACCACTGTGTGATGAGCCCATCAGGAATGTCAAGTTCAAGATTGTTGATTCCTGGATAGCACCAGAGCCATTGCACCGAGGATCTGGTCAGATGATTCCAACAGCACGTCGTGTTGCTTACTCATCCTTTCTCATGGCGACTCCGAGGCTCATGGAACCTGTCTACTATGTTGAGATACAAACACCGATAGACTGCGTTACTGCCATCTACACTGTTCTGTCACGTAGGCGTGGCCACGTGACTTCGGATGTTCCTCAGCCTGGTACCCCTGCGTATATCGTGAAGGCTTTCCTGCCAGTGATAGAGTCATTCGGGTTTGAGACAGATCTCAGGTACCACACACAGGGACAAGCCTTCTGCGTATCAGTCTTTGATCACTGGGCCATAGTTCCTGGAGATCCTCTCGACAAATCAATCCTATTGCGCCCACTTGAGCCAGCTCCCATTCAGCACCTAGCTCGTGAGTTCATGGTCAAGACCCGCCGTAGAAAGGGAATGAGTGAGGACGTAAGCGGGAACAAGTTCTTCGATGAAGCCATGATGGTAGAGCTAGCGCAGCAGACGGGTGATATGCATCTCCAAATGATGTGA
Protein:  
MDDSLYDEFGNYIGPEIESDRESDDEIEDEEFQDKQPEEDGSDGERGPGGSNGWITTINDVEMDNQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEMPIIKPVRDVRFEVGVKDSTTYVSTQFLVGLMSNPALMRNVALVGHIQHGKTVFMDMLVEQTHHMSTFNAKNEKHMKYTDTRVDEQERNISIKAVPMSLVLEDSRSKSYLCNVIDTPGHVNFSDEMTASLRLSDGAVLIVDAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHISAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKLYSKLHGVDMDVDKFASKLWGDVYYHPDTRAFKRSPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTLSNSAYKLNVRPLLRLACSSVFGSSSGFTDMLVKHIPSPKEAAARKVDHAYTGPKDSAIYEAMVECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGTLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNENYDEDVFIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRELYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKNLMMAVKDSIVQGFQWGAREGPLCDEPIRNVKFKIVDSWIAPEPLHRGSGQMIPTARRVAYSSFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETDLRYHTQGQAFCVSVFDHWAIVPGDPLDKSILLRPLEPAPIQHLAREFMVKTRRRKGMSEDVSGNKFFDEAMMVELAQQTGDMHLQMM